Package: UniprotR 2.2.1

Mohamed Soudy

UniprotR: Retrieving Information of Proteins from Uniprot

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.

Authors:Mohamed Soudy [aut, cre], Ali Mostafa [aut]

UniprotR_2.2.1.tar.gz
UniprotR_2.2.1.zip(r-4.5)UniprotR_2.2.1.zip(r-4.4)UniprotR_2.2.1.zip(r-4.3)
UniprotR_2.2.1.tgz(r-4.4-any)UniprotR_2.2.1.tgz(r-4.3-any)
UniprotR_2.2.1.tar.gz(r-4.5-noble)UniprotR_2.2.1.tar.gz(r-4.4-noble)
UniprotR_2.2.1.tgz(r-4.4-emscripten)UniprotR_2.2.1.tgz(r-4.3-emscripten)
UniprotR.pdf |UniprotR.html✨
UniprotR/json (API)

# Install 'UniprotR' in R:
install.packages('UniprotR', repos = c('https://proteomicslab57357.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/proteomicslab57357/uniprotr/issues

On CRAN:

5.85 score 58 stars 82 scripts 872 downloads 57 exports 187 dependencies

Last updated 2 years agofrom:28850e23f9. Checks:OK: 1 WARNING: 1 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winNOTENov 14 2024
R-4.5-linuxWARNINGNov 14 2024
R-4.4-winNOTENov 14 2024
R-4.4-macNOTENov 14 2024
R-4.3-winNOTENov 14 2024
R-4.3-macNOTEOct 15 2024

Exports:ConstructGenesTreeConstructLocTreeConvertIDEnrichment.BPEnrichment.CCEnrichment.KEGGEnrichment.MFEnrichment.REACGet.diseasesGetAccessionListGetExpressionGetFamily_DomainsGetGeneral_InformationGetMiscellaneousGetNamesTaxaGetPathology_BiotechGetpdbStructureGetProteinAnnontateGetProteinFunctionGetProteinGOInfoGetProteinInteractionsGetproteinNetworkGetproteinNetwork_allGetProteomeFastaGetProteomeInfoGetPTM_ProcessingGetPublicationGETSeqFastaUniprotGetSeqLengthGetSequenceIsoGetSequencesGetStructureInfoGetSubcellular_locationGoparseHandleBadRequestsPathway.EnrPlot.GOMolecularPlot.GOSubCellularPlotAcidityPlotChargePlotChromosomeInfoPlotEnrichedGOPlotEnrichedPathwaysPlotGenesNetworkPlotGOAllPlotGOBiologicalPlotGoInfoPlotGotermsPlotGravyPlotPhysicochemicalPlotproteinExistPlotProteinGO_bioPlotProteinGO_celPlotProteinGO_molcPlotproteinStatusPlotProteinTaxaProcessAcc

Dependencies:abindade4airralakazamapeaskpassbackportsbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbootbroombslibcachemcallrcarcarDatacellrangerclicliprcodetoolscolorspaceconflictedcorrplotcowplotcpp11crayoncrosstalkcurldata.tabledata.treeDBIdbplyrDelayedArrayDerivdigestdoBydplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsformatRFormulafsfutile.loggerfutile.optionsgarglegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2ggpubrggrepelggsciggsignifgluegoogledrivegooglesheets4gprofiler2gridExtragtablehavenhighrhmshtmltoolshtmlwidgetshttridsigraphIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelme4lubridatemagickmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnetworkD3nlmenloptrnnetnumDerivopensslpbkrtestpillarpixmappkgconfigplotlyplyrpolynomprettyunitsprocessxprogresspromisespspurrrqdapRegexquantregR6raggrappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlreadrreadxlrematchrematch2reprexRhtslibrlangrmarkdownRsamtoolsrstatixrstudioapirvestS4ArraysS4VectorssassscalessegmentedselectrseqinrsnowspSparseArraySparseMstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbUCSC.utilsutf8uuidvctrsviridisLitevroomwithrxfunxml2XVectoryamlzlibbioc

Readme and manuals

Help Manual

Help pageTopics
Connect and parse UniProt information.ConstructGenesTree
Connect and parse UniProt information.ConstructLocTree
Connect and parse UniProt database identifiers information.ConvertID
Connect and parse UniProt informationEnrichment.BP
Connect and parse UniProt informationEnrichment.CC
Connect and parse UniProt informationEnrichment.KEGG
Connect and parse UniProt informationEnrichment.MF
Connect and parse UniProt informationEnrichment.REAC
Connect and parse UniProt information.Get.diseases
Connect and parse UniProt information.GetAccessionList
Connect and parse UniProt Expression information.GetExpression
Connect and parse UniProt Family Domains information.GetFamily_Domains
Connect and parse UniProt General Information.GetGeneral_Information
Connect and parse UniProt Miscellaneous information.GetMiscellaneous
Connect and parse UniProt Names Taxa information.GetNamesTaxa
Connect and parse UniProt Pathology_Biotech information.GetPathology_Biotech
Connect and parse UniProt information.GetpdbStructure
Connect and parse UniProt information.GetProteinAnnontate
Connect and parse UniProt Protein Function information.GetProteinFunction
Connect and parse UniProt proteins gene ontology information.GetProteinGOInfo
Connect and parse UniProt protein Interactions information.GetProteinInteractions
Connect and parse stringdb information.GetproteinNetwork
Connect and parse stringdb information.GetproteinNetwork_all
Connect and DOWNLOAD Proteome info.GetProteomeFasta
Connect and DOWNLOAD Proteome info.GetProteomeInfo
Connect and parse UniProt PTM_Processsing information.GetPTM_Processing
Connect and parse UniProt Publication about a protein information.GetPublication
Connect and parse UniProt information.GETSeqFastaUniprot
Connect and parse UniProt Sequences information.GetSeqLength
Connect and parse UniProt Sequences information.GetSequenceIso
Connect and parse UniProt Sequences information.GetSequences
Connect and parse UniProt protein Structure information.GetStructureInfo
Connect and parse UniProt protein Subcellular location information.GetSubcellular_location
Connect and parse UniProt information.Goparse
Handle bad requests This Function is used to handle possible errors when trying to get url response.HandleBadRequests
Connect and parse UniProt informationPathway.Enr
Connect and parse UniProt information.Plot.GOMolecular
Connect and parse UniProt information.Plot.GOSubCellular
Connect and parse UniProt information.PlotAcidity
Connect and parse UniProt information.PlotCharge
Connect and parse UniProt information.PlotChromosomeInfo
Connect and parse UniProt informationPlotEnrichedGO
Connect and parse UniProt informationPlotEnrichedPathways
Connect and parse UniProt information.PlotGenesNetwork
Connect and parse UniProt information.PlotGOAll
Connect and parse UniProt information.PlotGOBiological
Connect and parse UniProt information.PlotGoInfo
Connect and parse UniProt information.PlotGoterms
Connect and parse UniProt information.PlotGravy
Connect and parse UniProt information.PlotPhysicochemical
Connect and parse UniProt information.PlotproteinExist
Connect and parse UniProt information.PlotProteinGO_bio
Connect and parse UniProt information.PlotProteinGO_cel
Connect and parse UniProt information.PlotProteinGO_molc
Connect and parse UniProt information.PlotproteinStatus
Connect and parse UniProt information.PlotProteinTaxa
Connect and parse UniProt information.ProcessAcc